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sambamba.def

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  • quantification_single.config 313 B
    profiles {
      docker {
        docker.temp = 'auto'
        docker.enabled = true
        process {
          $mapping_fastq {
            container = "rsem:1.3.0"
          }
        }
      }
      sge {
        process{
          $mapping_fastq {
            beforeScript = "module purge; module load RSEM/1.3.0; module load SAMtools/1.7"
          }
        }
      }
    }