cutadapt.def

Bootstrap: docker
From: ubuntu:18.04

%labels
MAINTAINER Laurent Modolo

%pos
mkdir -p /sps /pbs /scratch
CUTADAPT_VERSION=2.1
PACKAGES="bash \
             python3 \
             python3-dev \
             musl-dev \
             python3-pip \
             gcc"

apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean

pip3 install setuptools
pip3 install cutadapt==${CUTADAPT_VERSION}

%environment
export CUTADAPT_VERSION=2.1

%runscript
exec /bin/bash "$@"