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solution_RNASeq.nf
Dockerfile 635 B
FROM ubuntu:18.04
MAINTAINER Nicolas Fontrodona
ENV HISAT2_VERSION=2.0.0
ENV PACKAGES unzip=6.0* \
gcc=4:7.3.0* \
g++=4:7.3.0* \
make=4.1* \
curl=7.58.0* \
ca-certificates=20180409
RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
RUN curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip && \
unzip hisat2_linux-v${HISAT2_VERSION}.zip && \
cd hisat2-${HISAT2_VERSION}-beta && \
make && \
cp hisat2 /usr/bin && \
cp hisat2-* /usr/bin && \
rm -Rf hisat2-${HISAT2_VERSION}-beta