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split_bams.config

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  • Dockerfile 635 B
    FROM ubuntu:18.04
    MAINTAINER Nicolas Fontrodona
    
    ENV HISAT2_VERSION=2.0.0
    ENV PACKAGES unzip=6.0* \
       gcc=4:7.3.0* \
       g++=4:7.3.0* \
       make=4.1* \
       curl=7.58.0* \
       ca-certificates=20180409 
    
    RUN apt-get update && \
        apt-get install -y --no-install-recommends ${PACKAGES} && \
        apt-get clean
    
    RUN curl -k -L http://ccb.jhu.edu/software/hisat2/downloads/hisat2-${HISAT2_VERSION}-beta-source.zip -o hisat2_linux-v${HISAT2_VERSION}.zip && \
    unzip hisat2_linux-v${HISAT2_VERSION}.zip && \
    cd hisat2-${HISAT2_VERSION}-beta && \
    make && \
    cp hisat2 /usr/bin && \
    cp hisat2-* /usr/bin && \
    rm -Rf hisat2-${HISAT2_VERSION}-beta