bedtools.config

profiles {
  docker {
    docker.temp = 'auto'
    docker.enabled = true
    process {
      $fasta_from_bed {
        container = "bedtools:2.25.0"
      }
    }
  }
  sge {
    process{
      $fasta_from_bed {
        beforeScript = "module purge; module load BEDtools/2.25.0"
      }
    }
  }
}