modify add feature in exon PFN1P1 (pseudogene)

annot/tiny_v2.gff

@@ -104,6 +104,6 @@ NC_000001	GenBank	exon	96494	96791	0	+	1	gene_id=exon000024;ID=exon000024;Dbxref
 NC_000001	GenBank	exon	108617	108668	0	+	1	gene_id=exon000025;ID=exon000025;Dbxref=GeneID:11147;Parent=HHLA3.t02,HHLA3.r01;Name=HHLA3;
 NC_000001	GenBank	CDS	96636	96791	0	+	1	gene_id=HHLA3.p03;ID=HHLA3.p03;Parent=HHLA3.t03;Dbxref=GI:81295798,CCDS:CCDS649.1,GeneID:11147,HGNC:HGNC:4906,MIM:604372;Name=HHLA3;Note=isoform 3 is encoded by transcript variant 3%3B Derived by automated computational analysis using gene prediction method: BestRefSeq.;codon_start=1;product=HERV-H LTR-associating protein 3 isoform 3;protein_id=NP_001031723.1;translation=length.76;
 NC_000001	GenBank	CDS	108128	108202	0	+	1	gene_id=HHLA3.p03;ID=HHLA3.p03;Parent=HHLA3.t03;Dbxref=GI:81295798,CCDS:CCDS649.1,GeneID:11147,HGNC:HGNC:4906,MIM:604372;Name=HHLA3;Note=isoform 3 is encoded by transcript variant 3%3B Derived by automated computational analysis using gene prediction method: BestRefSeq.;codon_start=1;product=HERV-H LTR-associating protein 3 isoform 3;protein_id=NP_001031723.1;translation=length.76;
-NC_000001a	GenBank	chromosome	1	3001	0	+	1	gene_id=NC_000001;ID=NC_000001;Alias=1;Dbxref=BioProject:PRJNA168,taxon:9606;Name=NC_000001;Note=Homo sapiens chromosome 1%2C GRCh37.p13 Primary Assembly.,REFSEQ INFORMATION: The reference sequence is identical to CM000663.1. [WARNING] On Feb 3,2014 this sequence was replaced by NC_000001.11. On Jun 10,2009 this sequence version replaced NC_000001.9. Assembly Name: GRCh37.p13 Primary Assembly The DNA sequence is composed of genomic sequence,primarily finished clones that were sequenced as part of the Human Genome Project. PCR products and WGS shotgun sequence have been added where necessary to fill gaps or correct errors. All such additions are manually curated by GRC staff. For more information see: http://genomereference.org. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 5.1 Annotation Method :: Best-placed RefSeq,Gnomon Features Annotated :: Gene,mRNA,CDS,ncRNA ##Genome-Annotation-Data-END## ;chromosome=1;comment1=REFSEQ INFORMATION: The reference sequence is identical to CM000663.1. [WARNING] On Feb 3%2C 2014 this sequence was replaced by NC_000001.11. On Jun 10%2C 2009 this sequence version replaced NC_000001.9. Assembly Name: GRCh37.p13 Primary Assembly The DNA sequence is composed of genomic sequence%2C primarily finished clones that were sequenced as part of the Human Genome Project. PCR products and WGS shotgun sequence have been added where necessary to fill gaps or correct errors. All such additions are manually curated by GRC staff. For more information see: http://genomereference.org. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 5.1 Annotation Method :: Best-placed RefSeq%3B Gnomon Features Annotated :: Gene%3B mRNA%3B CDS%3B ncRNA ##Genome-Annotation-Data-END## ;date=13-AUG-2013;mol_type=genomic DNA;organism=Homo sapiens;
+NC_000001a	GenBank	chromosome	1	3001	0	+	1	gene_id=NC_000001a.chr;ID=NC_000001a.chr;Alias=1;Dbxref=BioProject:PRJNA168,taxon:9606;Name=NC_000001;Note=Homo sapiens chromosome 1%2C GRCh37.p13 Primary Assembly.,REFSEQ INFORMATION: The reference sequence is identical to CM000663.1. [WARNING] On Feb 3,2014 this sequence was replaced by NC_000001.11. On Jun 10,2009 this sequence version replaced NC_000001.9. Assembly Name: GRCh37.p13 Primary Assembly The DNA sequence is composed of genomic sequence,primarily finished clones that were sequenced as part of the Human Genome Project. PCR products and WGS shotgun sequence have been added where necessary to fill gaps or correct errors. All such additions are manually curated by GRC staff. For more information see: http://genomereference.org. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 5.1 Annotation Method :: Best-placed RefSeq,Gnomon Features Annotated :: Gene,mRNA,CDS,ncRNA ##Genome-Annotation-Data-END## ;chromosome=1;comment1=REFSEQ INFORMATION: The reference sequence is identical to CM000663.1. [WARNING] On Feb 3%2C 2014 this sequence was replaced by NC_000001.11. On Jun 10%2C 2009 this sequence version replaced NC_000001.9. Assembly Name: GRCh37.p13 Primary Assembly The DNA sequence is composed of genomic sequence%2C primarily finished clones that were sequenced as part of the Human Genome Project. PCR products and WGS shotgun sequence have been added where necessary to fill gaps or correct errors. All such additions are manually curated by GRC staff. For more information see: http://genomereference.org. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 5.1 Annotation Method :: Best-placed RefSeq%3B Gnomon Features Annotated :: Gene%3B mRNA%3B CDS%3B ncRNA ##Genome-Annotation-Data-END## ;date=13-AUG-2013;mol_type=genomic DNA;organism=Homo sapiens;
 NC_000001a	GenBank	pseudogene	1418	2229	0	-	1	gene_id=PFN1P1;ID=PFN1P1;Dbxref=GeneID:730138,HGNC:HGNC:42989;Name=PFN1P1;Note=profilin 1 pseudogene 1%3B Derived by automated computational analysis using gene prediction method: Curated Genomic.;pseudo=_no_value;
-NC_000001a	GenBank	exon	1418	2229	0	-	1	gene_id=exon000026;ID=exon000026;Dbxref=GeneID:730138,HGNC:HGNC:42989;Name=PFN1P1;Note=profilin 1 pseudogene 1%3B Derived by automated computational analysis using gene prediction method: Curated Genomic.;pseudo=_no_value;
+NC_000001a	GenBank	exon	1418	2229	0	-	1	gene_id=exon000026;Parent=PFN1P1;ID=exon000026;Dbxref=GeneID:730138,HGNC:HGNC:42989;Name=PFN1P1;Note=profilin 1 pseudogene 1%3B Derived by automated computational analysis using gene prediction method: Curated Genomic.;pseudo=_no_value;