Meta HiC pipeline: Documentation

The Meta HiC pipeline is split into the following pages:

• Usage hicpro workflow
  • An overview of how the pipeline works, how to run it and a description of all of the different command-line flags for the hicpro workflow.
• Usage hicstuff workflow
  • An overview of how the pipeline works, how to run it and a description of all of the different command-line flags for the hicstuff workflow.
• Output
  • /!\TO UPDATE/!\ An overview of the different results produced by the pipeline and how to interpret them.

You can find a lot more documentation about installing, configuring and running nf-core pipelines on the website: https://nf-co.re