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  • TEMPLATE
  • dev
  • fmortreu-master-patch-11d2
  • hicstuff
  • master default protected
  • modified_containers
  • nf-core-template-merge-1.13
  • nf-core-template-merge-1.13.1
  • nf-core-template-merge-1.13.2
  • nf-core-template-merge-1.13.3
  • nf-core-template-merge-1.14
  • nf-core-template-merge-2.0
  • nf-core-template-merge-2.0.1
  • nf-core-template-merge-2.1
  • nf-core-template-merge-2.2
  • nf-core-template-merge-2.3
  • nf-core-template-merge-2.3.1
  • nf-core-template-merge-2.3.2
  • nf-core-template-merge-2.4
  • nf-core-template-merge-2.5
  • 1.3.0
  • 1.2.2
  • 1.2.1
  • 1.2.0
  • 1.1.0
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Created with Raphaël 2.2.031Jan30292816Sep26Jul25221917153225Jun242017429May2221174Apr27Mar2126Feb221376230Jan2423221918Dec65430Nov15726Oct241221Sep2012116129Aug13Jul12105329Jun2316141312852131May2423221211104328Apr26230Mar2983127Feb161510330Jan21201613116419Dec84Oct1Sep30Aug29Jul28251816May109876524Mar23191528Feb2423211314Dec21Oct1224Sep27Jul139Jun24May21131211726Apr1916151425Mar23191825Feb42125Jan222013Dec130Nov282726197527Oct3Sep210Aug731Jul3097619Jun181128May27262019121141Apr12Feb30Jan2719Nov18Oct16151412111076414Sep6May3230Apr2819181716159543226Mar25add commentmastermasteradd scripts plots and coolersmall conclusionadd distance law for filter optionsadd distance law and balanced matriceschange matrices (reversed)fix text + change counts graphfranck's commentsfmortreu-master…fmortreu-master-patch-11d2add subtitles for each conditionsfix typosAdd benchmark README + figuresMerge branch 'master' of gitbio.ens-lyon.fr:LBMC/hub/hicAdd benchmark README + figuresupdate benchmark/plot.r and add plot_contact.rMerge branch 'master' of gitbio.ens-lyon.fr:LBMC/hub/hicchange default option for hicstuff bowtie2 mapping end to endadd script to run benchmarkadd default value for parasplitparasplit: fix parameters duplicationparasplit: fix fastq.gz extentionparasplit: add version and fix fastq.gz extentionparasplit: change mode from all to rfdecrease max memory from 128 to 64update parasplit to 1.1.2update parasplit to 1.0.4update parasplit to 1.0.2add fix for docker permissionupdate errorStrategyconf/base.config: degreasse max memory for high processadd option to use paraplit instead of cutsiteremove duplicate fields for execution tracecorrect schema againcorrect schema for readmecomment scriptignore benchmark txt filesadd cumsum plot + nm contacts plotadd replicas to plotorder process by category and pipeline orderadd saving plot in fileplot with realtime