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Created with Raphaël 2.2.05Dec430Nov15726Oct241221Sep2012116129Aug13Jul12105329Jun2316141312852131May2423221211104328Apr26230Mar2983127Feb161510330Jan21201613116419Dec84Oct1Sep30Aug29Jul28251816May109876524Mar23191528Feb2423211314Dec21Oct1224Sep27Jul139Jun24May21131211726Apr1916151425Mar23191825Feb42125Jan222013Dec130Nov282726197527Oct3Sep210Aug731Jul3097619Jun181128May27262019121141Apr12Feb30Jan2719Nov18Oct16151412111076414Sep6May3230Apr2819181716159543226Mar25add hicstuff versionscorrect schema placementadd pipeline schemaadd pipeline schemaupdate usage readme with saving optionsadd enabled option to avoid keeping heavy filesrefactorisation hicstuffadd arima for hicstuff as DpnII + HinfIcleaning param validation new stepcleaning + add option skip plot matrixsimplify int check and function for channel checkbypass validation error for bin_size and cotry skip param validation for bin_sizedevdevrun.sh: add resume tagadd versions to filter pcr picard subworkflowcorrect param name in usage docscorrect picard pcr filter for hicpropicard markduplicates process medium to highdelete error redirection from cooltools modulecorrect versions hicplotmatrixadd versions for hicplotmatrixadd new label for matrix plottingupdate modules to add versionsset high mem process 300GBUpdate README filesHicPlotMatrix process_high_memorygo back to default settingsgo back to base configadd quay.io and comment docker registrymodified_contai…modified_containerstry enable charliecloud in docker paramtry enable docker with charliecloudtry charliecloud registrytest add charliecloud docker registrytry picard hicpro + delete temp bam sorted filesTOFIX filter picard for hicpro correctionupdate json schemaupdate configs with hicstuff parametersmain.nf choice of workflowupdate docker registry + delete samtools indexcorrect subworkflow filter pcr dup