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Created with Raphaël 2.2.026Jul25221917153225Jun242017429May2221174Apr27Mar2126Feb221376230Jan2423221918Dec65430Nov15726Oct241221Sep2012116129Aug13Jul12105329Jun2316141312852131May2423221211104328Apr26230Mar2983127Feb161510330Jan21201613116419Dec84Oct1Sep30Aug29Jul28251816May109876524Mar23191528Feb2423211314Dec21Oct1224Sep27Jul139Jun24May21131211726Apr1916151425Mar23191825Feb42125Jan222013Dec130Nov282726197527Oct3Sep210Aug731Jul3097619Jun181128May27262019121141Apr12Feb30Jan2719Nov18Oct16151412111076414Sep6May3230Apr2819181716159543226Mar25Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/hub/hicchange default option for hicstuff bowtie2 mapping end to endadd script to run benchmarkadd default value for parasplitparasplit: fix parameters duplicationparasplit: fix fastq.gz extentionparasplit: add version and fix fastq.gz extentionparasplit: change mode from all to rfdecrease max memory from 128 to 64update parasplit to 1.1.2update parasplit to 1.0.4update parasplit to 1.0.2add fix for docker permissionupdate errorStrategyconf/base.config: degreasse max memory for high processadd option to use paraplit instead of cutsiteremove duplicate fields for execution tracecorrect schema againcorrect schema for readmecomment scriptignore benchmark txt filesadd cumsum plot + nm contacts plotadd replicas to plotorder process by category and pipeline orderadd saving plot in fileplot with realtimeplot per condition, process in x time in yread all trace files and plot benchmark (to clean)add more fields to execution tracefix typo filter hicstuffclean functions to call hicstuff functionsorigin_hicstufforigin_hicstuffupdate build matrices function + delete manual sortingadd the pairtools command to output final pairs fileuse hicstuff repo for hicstuff functionsadd Dockerfile to get up to date hicstuff docker imageadd hicstuff as git submodulechange errorStrategyfix argument name for filter_pcr and cutsite_seed default valueadd hicstuff report statsupdate main schema