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  • TEMPLATE
  • dev
  • fmortreu-master-patch-11d2
  • hicstuff
  • master default protected
  • modified_containers
  • nf-core-template-merge-1.13
  • nf-core-template-merge-1.13.1
  • nf-core-template-merge-1.13.2
  • nf-core-template-merge-1.13.3
  • nf-core-template-merge-1.14
  • nf-core-template-merge-2.0
  • nf-core-template-merge-2.0.1
  • nf-core-template-merge-2.1
  • nf-core-template-merge-2.2
  • nf-core-template-merge-2.3
  • nf-core-template-merge-2.3.1
  • nf-core-template-merge-2.3.2
  • nf-core-template-merge-2.4
  • nf-core-template-merge-2.5
  • 1.3.0
  • 1.2.2
  • 1.2.1
  • 1.2.0
  • 1.1.0
  • 1.0.0
26 results
Created with Raphaël 2.2.07Nov26Oct241221Sep2012116129Aug13Jul12105329Jun2316141312852131May2423221211104328Apr26230Mar2983127Feb161510330Jan21201613116419Dec84Oct1Sep30Aug29Jul28251816May109876524Mar23191528Feb2423211314Dec21Oct1224Sep27Jul139Jun24May21131211726Apr1916151425Mar23191825Feb42125Jan222013Dec130Nov282726197527Oct3Sep210Aug731Jul3097619Jun181128May27262019121141Apr12Feb30Jan2719Nov18Oct16151412111076414Sep6May3230Apr2819181716159543226Mar25cleaning + add option skip plot matrixsimplify int check and function for channel checkbypass validation error for bin_size and cotry skip param validation for bin_sizedevdevrun.sh: add resume tagadd versions to filter pcr picard subworkflowcorrect param name in usage docscorrect picard pcr filter for hicpropicard markduplicates process medium to highdelete error redirection from cooltools modulecorrect versions hicplotmatrixadd versions for hicplotmatrixadd new label for matrix plottingupdate modules to add versionsset high mem process 300GBUpdate README filesHicPlotMatrix process_high_memorygo back to default settingsgo back to base configadd quay.io and comment docker registrymodified_contai…modified_containerstry enable charliecloud in docker paramtry enable docker with charliecloudtry charliecloud registrytest add charliecloud docker registrytry picard hicpro + delete temp bam sorted filesTOFIX filter picard for hicpro correctionupdate json schemaupdate configs with hicstuff parametersmain.nf choice of workflowupdate docker registry + delete samtools indexcorrect subworkflow filter pcr duprefactorisation remove gatk modulerefactorisation add filter_pcr_picard to schemaMerge branch 'hicpro_picard' filter pcr dup for hicprofilter pcr dup for hicprocorrect path MarkDuplicateshicstuff nicohicstuff nicosubworkflows/local/hicstuff_sub.nf: remove some unused import and rename the SAMTOOLS_SORT processsubworkflows/local/hicstuff_sub.nf: updatesubworkflows/local/hicstuff_sub.nf: updatemodules/nf-core/custom/filterbam/main.nf: add new module