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Created with Raphaël 2.2.010Jul5329Jun2316141312852131May2423221211104328Apr26230Mar2983127Feb161510330Jan21201613116419Dec84Oct1Sep30Aug29Jul28251816May109876524Mar23191528Feb2423211314Dec21Oct1224Sep27Jul139Jun24May21131211726Apr1916151425Mar23191825Feb42125Jan222013Dec130Nov282726197527Oct3Sep210Aug731Jul3097619Jun181128May27262019121141Apr12Feb30Jan2719Nov18Oct16151412111076414Sep6May3230Apr2819181716159543226Mar25go back to base configadd quay.io and comment docker registrymodified_contai…modified_containerstry enable charliecloud in docker paramtry enable docker with charliecloudtry charliecloud registrytest add charliecloud docker registrytry picard hicpro + delete temp bam sorted filesTOFIX filter picard for hicpro correctionupdate json schemaupdate configs with hicstuff parametersmain.nf choice of workflowupdate docker registry + delete samtools indexcorrect subworkflow filter pcr duprefactorisation remove gatk modulerefactorisation add filter_pcr_picard to schemaMerge branch 'hicpro_picard' filter pcr dup for hicprofilter pcr dup for hicprocorrect path MarkDuplicateshicstuff nicohicstuff nicosubworkflows/local/hicstuff_sub.nf: remove some unused import and rename the SAMTOOLS_SORT processsubworkflows/local/hicstuff_sub.nf: updatesubworkflows/local/hicstuff_sub.nf: updatemodules/nf-core/custom/filterbam/main.nf: add new moduleTO FIX markduplicates picardsuppr viewcorrect path samtools sortcorrect path of markduplicatesTO FIX markduplicates pcr filter optionMerge pull request #169 from nf-core/devMerge pull request #168 from maxulysse/release_2.1.0Apply suggestions from code reviewUpdate conf/public_aws_ecr.configApply suggestions from code reviewupdate version in CHANGELOGMerge branch 'dev' into release_2.1.0Merge pull request #159 from nf-core/nf-core-template-merge-2.8bump versionprettierMerge branch 'dev' into nf-core-template-merge-2.8Merge pull request #166 from adamrtalbot/public_aws_ecr_profileRevert linting.yml