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Commit f5686750 authored by nservant's avatar nservant
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Add comments in bowtie call

parent 170a492b
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......@@ -46,7 +46,7 @@ workflow HICPRO_MAPPING {
ch_reads_r2 = reads.map{ it -> pairToSingle(it,"R2") }
ch_reads = ch_reads_r1.concat(ch_reads_r2)
// bowtie2
// bowtie2 - save_unaligned=true - sort_bam=false
BOWTIE2_ALIGN(
ch_reads,
index.collect(),
......@@ -63,7 +63,7 @@ workflow HICPRO_MAPPING {
)
ch_versions = ch_versions.mix(TRIM_READS.out.versions)
// bowtie2 on trimmed reads
// bowtie2 on trimmed reads - save_unaligned=false - sort_bam=false
BOWTIE2_ALIGN_TRIMMED(
TRIM_READS.out.fastq,
index.collect(),
......
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