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Unverified Commit eeadb7be authored by Nicolas Servant's avatar Nicolas Servant Committed by GitHub
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Merge pull request #74 from nservant/dev

small typo before release
parents c7f108ae 6c751607
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...@@ -3,7 +3,7 @@ ...@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## v1.2.2 - 2020-08-07 ## v1.2.2 - 2020-09-02
### `Added` ### `Added`
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...@@ -34,7 +34,7 @@ def helpMessage() { ...@@ -34,7 +34,7 @@ def helpMessage() {
--save_reference [bool] Save reference genome to output folder. Default: False --save_reference [bool] Save reference genome to output folder. Default: False
Alignments Alignments
--split_fastq [bool] Size of read chuncks to use to speed up the workflow. Default: None --split_fastq [int] Size of read chuncks to use to speed up the workflow. Default: None
--save_aligned_intermediates [bool] Save intermediates alignment files. Default: False --save_aligned_intermediates [bool] Save intermediates alignment files. Default: False
--bwt2_opts_end2end [str] Options for bowtie2 end-to-end mappinf (first mapping step). See hic.config for default. --bwt2_opts_end2end [str] Options for bowtie2 end-to-end mappinf (first mapping step). See hic.config for default.
--bwt2_opts_trimmed [str] Options for bowtie2 mapping after ligation site trimming. See hic.config for default. --bwt2_opts_trimmed [str] Options for bowtie2 mapping after ligation site trimming. See hic.config for default.
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