This pipeline is based on the [HiC-Pro workflow](https://github.com/nservant/HiC-Pro).
It was designed to process Hi-C data from raw fastq files (paired-end Illumina data) to normalized contact maps.
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@@ -41,3 +43,8 @@ The nf-core/hic pipeline comes with documentation about the pipeline, found in t
### Credits
nf-core/hic was originally written by Nicolas Servant.
If you use nf-core/hic for your analysis, please cite it using the following doi: [10.5281/zenodo.2669513](https://doi.org/10.5281/zenodo.2669513)
You can cite the `nf-core` pre-print as follows:
Ewels PA, Peltzer A, Fillinger S, Alneberg JA, Patel H, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. **nf-core: Community curated bioinformatics pipelines**. *bioRxiv*. 2019. p. 610741. [doi: 10.1101/610741](https://www.biorxiv.org/content/10.1101/610741v1).
