.github/.dockstore.yml

.github/CONTRIBUTING.md

.github/ISSUE_TEMPLATE/bug_report.md

.github/ISSUE_TEMPLATE/feature_request.md

.github/PULL_REQUEST_TEMPLATE.md

.github/workflows/awsfulltest.yml

.github/workflows/awstest.yml

.github/workflows/branch.yml

.github/workflows/ci.yml

.github/workflows/linting.yml

.github/workflows/push_dockerhub.yml

.gitignore

CHANGELOG.md

CODE_OF_CONDUCT.md

Dockerfile

README.md

bin/markdown_to_html.py

bin/scrape_software_versions.py

conf/hicpro.config

conf/test.config