.github/.dockstore.yml

.github/CONTRIBUTING.md

.github/ISSUE_TEMPLATE/bug_report.md

.github/ISSUE_TEMPLATE/feature_request.md

.github/PULL_REQUEST_TEMPLATE.md

.github/workflows/awsfulltest.yml

.github/workflows/awstest.yml

.github/workflows/branch.yml

.github/workflows/ci.yml

.github/workflows/linting.yml

CODE_OF_CONDUCT.md

Dockerfile

README.md

assets/email_template.html

conf/base.config

docs/output.md

docs/usage.md

lib/Headers.groovy

lib/NfcoreSchema.groovy

lib/nfcore_external_java_deps.jar