.editorconfig

.github/workflows/awsfulltest.yml

.github/workflows/awstest.yml

.github/workflows/ci.yml

CHANGELOG.md

CITATIONS.md

README.md

assets/methods_description_template.yml

assets/samplesheet.csv

bin/build_matrix

bin/check_samplesheet.py

bin/cutsite_trimming

bin/digest_genome.py

bin/hicpro_merge_validpairs.sh

bin/mapped_2hic_dnase.py

bin/mapped_2hic_fragments.py

bin/mergeSAM.py

bin/merge_statfiles.py

bin/src/build_matrix.cpp

bin/src/cutsite_trimming.cpp