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LBMC
Hub
hic
Commits
9fef6214
Commit
9fef6214
authored
3 years ago
by
nservant
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[MODIF] add hicexplorer
parent
f17ea6ff
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modules/local/hicexplorer/hicFindTADs.nf
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modules/local/hicexplorer/hicFindTADs.nf
modules/local/hicexplorer/hicPlotDistVsCounts.nf
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28 additions, 0 deletions
modules/local/hicexplorer/hicPlotDistVsCounts.nf
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modules/local/hicexplorer/hicFindTADs.nf
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9fef6214
/*
* hicexplorer - hicFindTADs
*/
process HIC_FIND_TADS {
label 'process_medium'
input:
tuple val(meta), path(cool)
output:
path("*hicfindtads*"), emit:results
path("versions.yml"), emit:versions
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
"""
hicFindTADs --matrix ${cool} \
--outPrefix ${prefix}_hicfindtads \
${args} \
--numberOfProcessors ${task.cpus}
cat <<-END_VERSIONS > versions.yml
"${task.process}":
hicexplorer: \$(hicFindTADs --version 2>&1 | sed 's/hicFindTADs //')
END_VERSIONS
"""
}
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modules/local/hicexplorer/hicPlotDistVsCounts.nf
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9fef6214
/*
* hicexplorer - hicPlotDistVsCounts
*/
process HIC_PLOT_DIST_VS_COUNTS {
label 'process_medium'
input:
tuple val(meta), path(cool)
output:
path("*distcount*"), emit:results
path("versions.yml"), emit:versions
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
"""
hicPlotDistVsCounts --matrices ${cool} \
--plotFile ${prefix}_distcount.png \
--outFileData ${prefix}_distcount.txt
cat <<-END_VERSIONS > versions.yml
"${task.process}":
hicexplorer: \$(hicPlotDistVsCounts --version 2>&1 | sed 's/hicPlotDistVsCounts //')
END_VERSIONS
"""
}
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