"description":"If generated by the pipeline save the annotation and indexes in the results directory.",
"help_text":"Use this parameter to save all annotations to your results folder. These can then be used for future pipeline runs, reducing processing times.",
"fa_icon":"fas fa-save"
},
"save_nonvalid_pairs":{
"type":"boolean",
"description":"Save the non valid pairs detected by HiC-Pro.",
"help_text":"Use this parameter to save non valid pairs detected by HiC-Pro (dangling-end, self-circle, re-ligation, filtered).",
