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LBMC
Hub
hic
Commits
93bf83aa
Commit
93bf83aa
authored
5 years ago
by
nservant
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dump v1.1.1dev
parent
e089d0b8
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Changes
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4 changed files
.travis.yml
+1
-1
1 addition, 1 deletion
.travis.yml
Dockerfile
+1
-1
1 addition, 1 deletion
Dockerfile
environment.yml
+1
-1
1 addition, 1 deletion
environment.yml
nextflow.config
+2
-2
2 additions, 2 deletions
nextflow.config
with
5 additions
and
5 deletions
.travis.yml
+
1
−
1
View file @
93bf83aa
...
@@ -13,7 +13,7 @@ before_install:
...
@@ -13,7 +13,7 @@ before_install:
-
docker pull nfcore/hic:dev
-
docker pull nfcore/hic:dev
# Fake the tag locally so that the pipeline runs properly
# Fake the tag locally so that the pipeline runs properly
# Looks weird when this is :dev to :dev, but makes sense when testing code for a release (:dev to :1.0.1)
# Looks weird when this is :dev to :dev, but makes sense when testing code for a release (:dev to :1.0.1)
-
docker tag nfcore/hic:dev nfcore/hic:
1.1.0
-
docker tag nfcore/hic:dev nfcore/hic:
dev
install
:
install
:
# Install Nextflow
# Install Nextflow
...
...
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Dockerfile
+
1
−
1
View file @
93bf83aa
...
@@ -7,4 +7,4 @@ RUN apt-get update && apt-get install -y gcc g++ && apt-get clean -y
...
@@ -7,4 +7,4 @@ RUN apt-get update && apt-get install -y gcc g++ && apt-get clean -y
COPY
environment.yml /
COPY
environment.yml /
RUN
conda
env
create
-f
/environment.yml
&&
conda clean
-a
RUN
conda
env
create
-f
/environment.yml
&&
conda clean
-a
ENV
PATH /opt/conda/envs/nf-core-hic-1.1.
0
/bin:$PATH
ENV
PATH /opt/conda/envs/nf-core-hic-1.1.
1dev
/bin:$PATH
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environment.yml
+
1
−
1
View file @
93bf83aa
# You can use this file to create a conda environment for this pipeline:
# You can use this file to create a conda environment for this pipeline:
# conda env create -f environment.yml
# conda env create -f environment.yml
name
:
nf-core-hic-1.1.
0
name
:
nf-core-hic-1.1.
1dev
channels
:
channels
:
-
conda-forge
-
conda-forge
-
bioconda
-
bioconda
...
...
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nextflow.config
+
2
−
2
View file @
93bf83aa
...
@@ -45,7 +45,7 @@ params {
...
@@ -45,7 +45,7 @@ params {
//
Container
slug
.
Stable
releases
should
specify
release
tag
!
//
Container
slug
.
Stable
releases
should
specify
release
tag
!
//
Developmental
code
should
specify
:
dev
//
Developmental
code
should
specify
:
dev
process
.
container
=
'nfcore/hic:
1.1.0
'
process
.
container
=
'nfcore/hic:
dev
'
//
Load
base
.
config
by
default
for
all
pipelines
//
Load
base
.
config
by
default
for
all
pipelines
includeConfig
'conf/base.config'
includeConfig
'conf/base.config'
...
@@ -102,7 +102,7 @@ manifest {
...
@@ -102,7 +102,7 @@ manifest {
description
=
'Analysis of Chromosome Conformation Capture data (Hi-C)'
description
=
'Analysis of Chromosome Conformation Capture data (Hi-C)'
mainScript
=
'main.nf'
mainScript
=
'main.nf'
nextflowVersion
=
'>=19.04.0'
nextflowVersion
=
'>=19.04.0'
version
=
'1.1.
0
'
version
=
'1.1.
1dev
'
}
}
//
Function
to
ensure
that
resource
requirements
don
'
t
go
beyond
//
Function
to
ensure
that
resource
requirements
don
'
t
go
beyond
...
...
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