Merge pull request #110 from nservant/dev

Fix bug in environment

CHANGELOG.md

@@ -3,7 +3,13 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.3.0 - 2021-22-05
+## v1.3.1 - 2021-09-25
+
+### `Fixed`
+
+* Fix bug in conda environment for cooltools (#109)
+
+## v1.3.0 - 2021-05-22
 
 * Change the `/tmp/` folder to `./tmp/` folder so that all tmp files are now in the work directory (#24)
 * Add `--hicpro_maps` options to generate the raw and normalized HiC-Pro maps. The default is now to use cooler

environment.yml

@@ -16,6 +16,7 @@ dependencies:
   - bioconda::pysam=0.15.4
   - conda-forge::pymdown-extensions=7.1
   - bioconda::cooler=0.8.6
+  - bioconda::cooltools=0.4.0
   - bioconda::bowtie2=2.3.5
   - bioconda::samtools=1.9
   - bioconda::multiqc=1.8
@@ -27,5 +28,4 @@ dependencies:
   - bioconda::ucsc-bedgraphtobigwig=357
   - conda-forge::cython=0.29.19
   - pip:
-    - cooltools==0.4.0
     - fanc==0.8.30
\ No newline at end of file

nextflow.config

@@ -225,7 +225,7 @@ manifest {
   description = 'Analysis of Chromosome Conformation Capture data (Hi-C)'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.04.0'
-  version = '1.3.0'
+  version = '1.3.1'
 }
 
 // Function to ensure that resource requirements don't go beyond