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Verified Commit 597b7478 authored by Laurent Modolo's avatar Laurent Modolo
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parasplit: change mode from all to rf

parent 302846b2
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......@@ -18,7 +18,7 @@ process PARASPLIT {
def output_rev = task.ext.output_rev ?: "${meta2.id}_${meta2.chunk}_${meta2.mates}.fastq"
"""
parasplit -sf ${reads1} -sr ${reads2} -le ${digestion} -of ${output_for} -or ${output_rev} -nt ${task.cpus} -sz 20 -m all ${args}
parasplit -sf ${reads1} -sr ${reads2} -le ${digestion} -of ${output_for} -or ${output_rev} -nt ${task.cpus} -sz 20 -m rf ${args}
cat <<-END_VERSIONS > versions.yml
"${task.process}":
parasplit: v0.3.1)
......
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