[MODIF] remove sort from get_valid_interaction

modules/local/hicpro/get_valid_interaction.nf

@@ -29,8 +29,6 @@ process GET_VALID_INTERACTION {
     --all \\
     ${args}
 
-  sort -k2,2V -k3,3n -k5,5V -k6,6n -o ${bam.baseName}.validPairs ${bam.baseName}.validPairs
-
   cat <<-END_VERSIONS > versions.yml
   "${task.process}":
     python: \$(echo \$(python --version 2>&1) | sed 's/Python //')

modules/local/hicpro/get_valid_interaction_dnase.nf

@@ -22,8 +22,6 @@ process GET_VALID_INTERACTION_DNASE {
     -r ${bam} \\
     ${args}
 
-  sort -k2,2V -k3,3n -k5,5V -k6,6n -o ${bam.baseName}.validPairs ${bam.baseName}.validPairs
-
   cat <<-END_VERSIONS > versions.yml
   "${task.process}":
     python: \$(echo \$(python --version 2>&1) | sed 's/Python //')

modules/local/hicpro/trim_reads.nf

@@ -26,7 +26,7 @@ process TRIM_READS {
 
   cat <<-END_VERSIONS > versions.yml
   "${task.process}":
-      python: \$(echo \$(python --version 2>&1) | sed 's/^Python//; s/ .*\$//')
+      gzip: \$(echo \$(gzip --version 2>&1) | head -1 | cut -d" " -f2)
   END_VERSIONS
   """
 }