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Unverified Commit 40b544c8 authored by Nicolas Servant's avatar Nicolas Servant Committed by GitHub
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Update main.nf 


Co-authored-by: default avatarMatthias Hörtenhuber <mashehu@users.noreply.github.com>
parent 3ed7b6d4
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...@@ -121,9 +121,6 @@ if (params.split_fastq ){ ...@@ -121,9 +121,6 @@ if (params.split_fastq ){
// Reference genome // Reference genome
if ( params.bwt2_index ){ if ( params.bwt2_index ){
//lastPath = params.bwt2_index.lastIndexOf(File.separator)
//bwt2_dir = params.bwt2_index.substring(0,lastPath+1)
//bwt2_base = params.bwt2_index.substring(lastPath+1)
Channel.fromPath( params.bwt2_index , checkIfExists: true) Channel.fromPath( params.bwt2_index , checkIfExists: true)
.ifEmpty { exit 1, "Genome index: Provided index not found: ${params.bwt2_index}" } .ifEmpty { exit 1, "Genome index: Provided index not found: ${params.bwt2_index}" }
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