.gitattributes

.github/CONTRIBUTING.md

.github/ISSUE_TEMPLATE/bug_report.md

.github/ISSUE_TEMPLATE/feature_request.md

.github/PULL_REQUEST_TEMPLATE.md

.github/markdownlint.yml

.gitignore

.travis.yml

CHANGELOG.md

CODE_OF_CONDUCT.md

Dockerfile

LICENSE

README.md

assets/email_template.html

assets/email_template.txt

assets/multiqc_config.yaml

assets/sendmail_template.txt

bin/markdown_to_html.r

bin/scrape_software_versions.py

conf/awsbatch.config