base.config 1.88 KiB
/*
* -------------------------------------------------
* nf-core/hic Nextflow base config file
* -------------------------------------------------
* A 'blank slate' config file, appropriate for general
* use on most high performace compute environments.
* Assumes that all software is installed and available
* on the PATH. Runs in `local` mode - all jobs will be
* run on the logged in environment.
*/
process {
// TODO nf-core: Check the defaults for all processes
cpus = { check_max( 1 * task.attempt, 'cpus' ) }
memory = { check_max( 7.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
errorStrategy = { task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish' }
maxRetries = 1
maxErrors = '-1'
// Process-specific resource requirements
// NOTE - Only one of the labels below are used in the fastqc process in the main script.
// If possible, it would be nice to keep the same label naming convention when
// adding in your processes.
// TODO nf-core: Customise requirements for specific processes.
// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors
withLabel:process_low {
cpus = { check_max( 2 * task.attempt, 'cpus' ) }
memory = { check_max( 14.GB * task.attempt, 'memory' ) }
time = { check_max( 6.h * task.attempt, 'time' ) }
}
withLabel:process_medium {
cpus = { check_max( 6 * task.attempt, 'cpus' ) }
memory = { check_max( 42.GB * task.attempt, 'memory' ) }
time = { check_max( 8.h * task.attempt, 'time' ) }
}
withLabel:process_high {
cpus = { check_max( 12 * task.attempt, 'cpus' ) }
memory = { check_max( 84.GB * task.attempt, 'memory' ) }
time = { check_max( 10.h * task.attempt, 'time' ) }
}
withLabel:process_long {
time = { check_max( 20.h * task.attempt, 'time' ) }
}
withName:get_software_versions {
cache = false
}
}