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<head>
<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1" />
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<meta name="description" content="nf-core/hic: Analysis of Chromosome Conformation Capture data (Hi-C)" />
<title>nf-core/hic Pipeline Report</title>
</head>
<body>
<div style="font-family: Helvetica, Arial, sans-serif; padding: 30px; max-width: 800px; margin: 0 auto">
<img src="cid:nfcorepipelinelogo" />
<h1>nf-core/hic v${version}</h1>
<h2>Run Name: $runName</h2>
<% if (!success){ out << """
<div
style="
color: #a94442;
background-color: #f2dede;
border-color: #ebccd1;
padding: 15px;
margin-bottom: 20px;
border: 1px solid transparent;
border-radius: 4px;
"
>
<h4 style="margin-top: 0; color: inherit">nf-core/hic execution completed unsuccessfully!</h4>
<p>The exit status of the task that caused the workflow execution to fail was: <code>$exitStatus</code>.</p>
<p>The full error message was:</p>
<pre style="white-space: pre-wrap; overflow: visible; margin-bottom: 0">${errorReport}</pre>
</div>
""" } else { out << """
<div
style="
color: #3c763d;
background-color: #dff0d8;
border-color: #d6e9c6;
padding: 15px;
margin-bottom: 20px;
border: 1px solid transparent;
border-radius: 4px;
"
>
nf-core/hic execution completed successfully!
<p>The workflow was completed at <strong>$dateComplete</strong> (duration: <strong>$duration</strong>)</p>
<p>The command used to launch the workflow was as follows:</p>
<pre
style="
white-space: pre-wrap;
overflow: visible;
background-color: #ededed;
padding: 15px;
border-radius: 4px;
margin-bottom: 30px;
"
>
$commandLine</pre
>
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<h3>Pipeline Configuration:</h3>
<table
style="
width: 100%;
max-width: 100%;
border-spacing: 0;
border-collapse: collapse;
border: 0;
margin-bottom: 30px;
"
>
<tbody style="border-bottom: 1px solid #ddd">
<% out << summary.collect{ k,v -> "
<tr>
<th
style="
text-align: left;
padding: 8px 0;
line-height: 1.42857143;
vertical-align: top;
border-top: 1px solid #ddd;
"
>
$k
</th>
<td
style="
text-align: left;
padding: 8px;
line-height: 1.42857143;
vertical-align: top;
border-top: 1px solid #ddd;
"
>
<pre style="white-space: pre-wrap; overflow: visible">$v</pre>
</td>
</tr>
" }.join("\n") %>
</tbody>
</table>
<p>nf-core/hic</p>
<p><a href="https://github.com/nf-core/hic">https://github.com/nf-core/hic</a></p>
</div>
</body>