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The Meta HiC pipeline is split into the following pages:
- [Usage hicpro workflow](usage.md)
- An overview of how the pipeline works, how to run it and a description of all of the different command-line flags for the hicpro workflow.
- [Usage hicstuff workflow](hicstuff_usage.md)
- An overview of how the pipeline works, how to run it and a description of all of the different command-line flags for the hicstuff workflow.
- /!\TO UPDATE/!\ An overview of the different results produced by the pipeline and how to interpret them.
You can find a lot more documentation about installing, configuring and running nf-core pipelines on the website: [https://nf-co.re](https://nf-co.re)