README.md

# nf-core/hic: Documentation

The nf-core/hic documentation is split into the following files:

1. [Installation](installation.md)
2. Pipeline configuration
    * [Local installation](configuration/local.md)
    * [Adding your own system](configuration/adding_your_own.md)
    * [Reference genomes](configuration/reference_genomes.md)
3. [Running the pipeline](usage.md)
4. [Output and how to interpret the results](output.md)
5. [Troubleshooting](troubleshooting.md)