test.config

/*
 * -------------------------------------------------
 *  Nextflow config file for running tests
 * -------------------------------------------------
 * Defines bundled input files and everything required
 * to run a fast and simple test. Use as follows:
 *   nextflow run nf-core/hic -profile test
 */

params {

  config_profile_name = 'Hi-C test data from Dixon et al. (2012)'
  config_profile_description = 'Minimal test dataset to check pipeline function'

  // Limit resources so that this can run on Travis
  max_cpus = 4
  max_memory = 6.GB
  max_time = 1.h
  
  // Input data
  readPaths = [
    ['SRR400264_00', ['https://github.com/nf-core/test-datasets/raw/hic/testdata/SRR400264_00_R1.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/hic/testdata/SRR400264_00_R2.fastq.gz']],
    ['SRR400264_01', ['https://github.com/nf-core/test-datasets/raw/hic/testdata/SRR400264_01_R1.fastq.gz', 'https://github.com/nf-core/test-datasets/raw/hic/testdata/SRR400264_01_R2.fastq.gz']]
  ]

  // Annotations
  genome = 'GRch37'
}