Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
T
TreeFrog scRNASeq
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Package registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
LBMC
Hub
formations
TreeFrog scRNASeq
Commits
ef3d1bb3
Verified
Commit
ef3d1bb3
authored
3 years ago
by
Laurent Modolo
Browse files
Options
Downloads
Patches
Plain Diff
update img path
parent
0f213906
No related branches found
No related tags found
No related merge requests found
Pipeline
#341
failed
3 years ago
Stage: deploy
Changes
3
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
3 changed files
.gitlab-ci.yml
+0
-2
0 additions, 2 deletions
.gitlab-ci.yml
1_scrnaseq_data/scrnaseq_data.Rmd
+2
-4
2 additions, 4 deletions
1_scrnaseq_data/scrnaseq_data.Rmd
5_pseudo_time/pseudo_time.Rmd
+6
-3
6 additions, 3 deletions
5_pseudo_time/pseudo_time.Rmd
with
8 additions
and
9 deletions
.gitlab-ci.yml
+
0
−
2
View file @
ef3d1bb3
...
...
@@ -3,8 +3,6 @@ pages:
image
:
rocker/r-rmd
script
:
-
mkdir -p public/img
-
ls -l
-
pwd
-
make
-
cp 1_scrnaseq_data/scrnaseq_data.pdf 2_normalization/normalization.pdf 3_dimension_reduction/dimension_reduction.pdf 4_clustering/clustering.pdf 5_pseudo_time/pseudo_time.pdf 6_dea/dea.pdf public/
artifacts
:
...
...
This diff is collapsed.
Click to expand it.
1_scrnaseq_data/scrnaseq_data.Rmd
+
2
−
4
View file @
ef3d1bb3
...
...
@@ -789,8 +789,7 @@ Do we keep reads mapping after the annotated 3' UTR ?
\begin{columns}
\column{0.65\textwidth}
\begin{center}
\includegraphics[width=\textwidth]{img/discared_reads.png
}
\includegraphics[width=\textwidth]{img/discared_reads.png}
\end{center}
\column{0.35\textwidth}
{\bf Your best marker genes could be in the small percent of genes lost}
...
...
@@ -803,8 +802,7 @@ Why bother ?
\vspace{-1.5em}
\begin{center}
\includegraphics[width=.8\textwidth]{img/full_length_vs_3prim.png
}
\includegraphics[width=.8\textwidth]{img/full_length_vs_3prim.png}
\end{center}
# Quantification
...
...
This diff is collapsed.
Click to expand it.
5_pseudo_time/pseudo_time.Rmd
+
6
−
3
View file @
ef3d1bb3
...
...
@@ -369,25 +369,28 @@ When we have a scRNASeq time serie we want:
## Waddington OT
### Finding the best cell coupling
\begin{center}
\href{olivier gandrillon}{
\includegraphics[width=0.
5
\textwidth]{img/coupling_1.png}
\includegraphics[width=0.
4
\textwidth]{img/coupling_1.png}
}
\end{center}
## Waddington OT
### Finding the best cell coupling
\begin{center}
\href{olivier gandrillon}{
\includegraphics[width=0.
5
\textwidth]{img/coupling_2.png}
\includegraphics[width=0.
4
\textwidth]{img/coupling_2.png}
}
\end{center}
## Waddington OT
### Finding the best cell coupling
\begin{center}
\href{olivier gandrillon}{
\includegraphics[width=0.
5
\textwidth]{img/coupling_3.png}
\includegraphics[width=0.
4
\textwidth]{img/coupling_3.png}
}
\end{center}
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment