update img path

.gitlab-ci.yml

@@ -3,8 +3,6 @@ pages:
   image: rocker/r-rmd
   script:
     - mkdir -p public/img
-    - ls -l
-    - pwd
     - make
     - cp 1_scrnaseq_data/scrnaseq_data.pdf 2_normalization/normalization.pdf 3_dimension_reduction/dimension_reduction.pdf 4_clustering/clustering.pdf 5_pseudo_time/pseudo_time.pdf 6_dea/dea.pdf public/
   artifacts:

1_scrnaseq_data/scrnaseq_data.Rmd

@@ -789,8 +789,7 @@ Do we keep reads mapping after the annotated 3' UTR ?
 \begin{columns}
 \column{0.65\textwidth}
 \begin{center}
-\includegraphics[width=\textwidth]{img/discared_reads.png
-}
+\includegraphics[width=\textwidth]{img/discared_reads.png}
 \end{center}
 \column{0.35\textwidth}
 {\bf Your best marker genes could be in the small percent of genes lost}
@@ -803,8 +802,7 @@ Why bother ?
 \vspace{-1.5em}
 
 \begin{center}
-\includegraphics[width=.8\textwidth]{img/full_length_vs_3prim.png
-}
+\includegraphics[width=.8\textwidth]{img/full_length_vs_3prim.png}
 \end{center}
 
 # Quantification

5_pseudo_time/pseudo_time.Rmd

@@ -369,25 +369,28 @@ When we have a scRNASeq time serie we want:
 
 ## Waddington OT
 
+### Finding the best cell coupling
 \begin{center}
   \href{olivier gandrillon}{
-    \includegraphics[width=0.5\textwidth]{img/coupling_1.png}
+    \includegraphics[width=0.4\textwidth]{img/coupling_1.png}
   }
 \end{center}
 
 ## Waddington OT
 
+### Finding the best cell coupling
 \begin{center}
   \href{olivier gandrillon}{
-    \includegraphics[width=0.5\textwidth]{img/coupling_2.png}
+    \includegraphics[width=0.4\textwidth]{img/coupling_2.png}
   }
 \end{center}
 
 ## Waddington OT
 
+### Finding the best cell coupling
 \begin{center}
   \href{olivier gandrillon}{
-    \includegraphics[width=0.5\textwidth]{img/coupling_3.png}
+    \includegraphics[width=0.4\textwidth]{img/coupling_3.png}
   }
 \end{center}