install tidyverse

.gitlab-ci.yml

@@ -3,6 +3,7 @@ pages:
   image: rocker/r-rmd
   script:
     - mkdir -p public/img
+    - R -e 'install.packages("tidyverse")'
     - make
     - cp 1_scrnaseq_data/scrnaseq_data.pdf 2_normalization/normalization.pdf 3_dimension_reduction/dimension_reduction.pdf 4_clustering/clustering.pdf 5_pseudo_time/pseudo_time.pdf 6_dea/dea.pdf public/
   artifacts:

5_pseudo_time/pseudo_time.Rmd

@@ -464,7 +464,7 @@ the velocity $v_i$ may be computed for each cell $i$:
 
 \begin{center}
   \href{https://doi.org/10.1101/2022.06.19.494717}{
-    \includegraphics[width=\textwidth]{img/velocity_dim_red_1.png}
+    \includegraphics[width=0.6\textwidth]{img/velocity_dim_red_1.png}
   }
 \end{center}
 
@@ -474,7 +474,7 @@ the velocity $v_i$ may be computed for each cell $i$:
 
 \begin{center}
   \href{https://doi.org/10.1101/2022.06.19.494717}{
-    \includegraphics[width=\textwidth]{img/velocity_dim_red_2.png}
+    \includegraphics[width=0.9\textwidth]{img/velocity_dim_red_2.png}
   }
   simulation on a dataset of 10 genes
 \end{center}