bioconductor.Rmd

title: 'R.1: Installing packages from Bioconductor'
author: "Carine Rey [carine.rey@ens-lyon.fr](mailto:carine.rey@ens-lyon.fr), Laurent Modolo [laurent.modolo@ens-lyon.fr](mailto:laurent.modolo@ens-lyon.fr)"
date: "2021"
output:
  rmdformats::downcute:
    self_contain: true
    use_bookdown: true
    default_style: "dark"
    lightbox: true
    css: "../src/style.css"

rm(list=ls())
knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(comment = NA)

klippy::klippy(
  position = c('top', 'right'),
  color = "white",
  tooltip_message = 'Click to copy',
  tooltip_success = 'Copied !')

To install packages from bioconductor you must first install a package called "BiocManager". This package imports a function called "install" allowing you to install packages hosted in bioconductor from their name.

To install "BiocManager" you must type:

install.packages("BiocManager")

Then to install, for example "tximport", you just have to write:

BiocManager::install("tximport")