Commits · 1041a4af40514ce6435e6f11e227ec4dbc861489 · LBMC / RMI2 / RMI2 pipelines

Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 18, 2018
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  3d96bc33
Jun 07, 2018
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  39257434
Jun 06, 2018
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  3454e1e8
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored 6 years ago
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored 6 years ago
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored 6 years ago
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  52d58451
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored 6 years ago
  
  b6575e65
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  8aee48b9
Jun 05, 2018
- mv nf files to nf_modules · 705226a9
  Laurent Modolo authored 6 years ago
  
  705226a9
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  v0.1.0
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored 6 years ago
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored 6 years ago
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored 6 years ago
  
  91613eea
Jun 04, 2018
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored 6 years ago
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored 6 years ago
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored 6 years ago
  
  5b1011f6
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored 6 years ago
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored 6 years ago
  
  f594ce88
- SAMtools.config: fix container name · 2a51f02d
  Laurent Modolo authored 6 years ago
  
  2a51f02d
- SAMtools: add nf and test scripts · e77f630e
  Laurent Modolo authored 6 years ago
  
  e77f630e
Jun 01, 2018
- UrQt: add tests · 051b3925
  Laurent Modolo authored 6 years ago
  
  051b3925
- UrQt: add tests, nf and config · 86a16ba6
  Laurent Modolo authored 6 years ago
  
  86a16ba6
- cutadapt.nf: improve description · a55eb6da
  Laurent Modolo authored 6 years ago
  
  a55eb6da
- cutadapt: add tests and config · 2c488dbf
  Laurent Modolo authored 6 years ago
  
  2c488dbf
May 31, 2018
- cutadapt.nf: add trimming script · 9ae3505c
  Laurent Modolo authored 6 years ago
  
  9ae3505c
- cutadapt.nf: adaptator trimming code for paired and single-ends · aafb78a0
  Laurent Modolo authored 6 years ago
  
  aafb78a0
- UrQt/d62c1f8: add docker files · 083ce11c
  Laurent Modolo authored 6 years ago
  
  083ce11c
- RSEM/1.3.0: add docker files · 211d7cd7
  Laurent Modolo authored 6 years ago
  
  211d7cd7
May 30, 2018
- Salmon/0.8.2: add docker files · a2ddd33f
  Laurent Modolo authored 6 years ago
  
  a2ddd33f
- MultiQC/1.0: add docker files · 65508b53
  Laurent Modolo authored 6 years ago
  
  65508b53
- Trimmomatic/0.36: add docker files · deb2e053
  Laurent Modolo authored 6 years ago
  
  deb2e053
- deepTools/3.0.2: add docker files · 950416c3
  Laurent Modolo authored 6 years ago
  
  950416c3
- HTSeq/0.8.0: add docker files · bf9c81d8
  Laurent Modolo authored 6 years ago
  
  bf9c81d8