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Verified Commit b25300b2 authored by Laurent Modolo's avatar Laurent Modolo
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docker: add crossbuild for every tools

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#!/bin/sh #!/bin/sh
docker pull lbmc/agat:0.8.0 docker pull lbmc/agat:0.8.0
docker build src/.docker_modules/agat/0.8.0 -t 'lbmc/agat:0.8.0' # docker build src/.docker_modules/agat/0.8.0 -t 'lbmc/agat:0.8.0'
docker push lbmc/agat:0.8.0 # docker push lbmc/agat:0.8.0
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/agat:0.8.0" --push src/.docker_modules/agat/0.8.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/agat:0.8.0" --push src/.docker_modules/agat/0.8.0
#!/bin/sh #!/bin/sh
docker pull lbmc/alntools:dd96682 docker pull lbmc/alntools:dd96682
docker build src/.docker_modules/alntools/dd96682 -t 'lbmc/alntools:dd96682' # docker build src/.docker_modules/alntools/dd96682 -t 'lbmc/alntools:dd96682'
docker push lbmc/alntools:dd96682 # docker push lbmc/alntools:dd96682
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/alntools:dd96682" --push src/.docker_modules/alntools/dd96682 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/alntools:dd96682" --push src/.docker_modules/alntools/dd96682
#!/bin/sh #!/bin/sh
docker pull lbmc/bamutils:1.0.14 docker pull lbmc/bamutils:1.0.14
docker build src/.docker_modules/bamutils/1.0.14 -t 'lbmc/bamutils:1.0.14' # docker build src/.docker_modules/bamutils/1.0.14 -t 'lbmc/bamutils:1.0.14'
docker push lbmc/bamutils:1.0.14 # docker push lbmc/bamutils:1.0.14
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bamutils:1.0.14" --push src/.docker_modules/bamutils/1.0.14 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bamutils:1.0.14" --push src/.docker_modules/bamutils/1.0.14
#!/bin/sh #!/bin/sh
docker pull lbmc/bcftools:1.7 docker pull lbmc/bcftools:1.7
docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' # docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7'
docker push lbmc/bcftools:1.7 # docker push lbmc/bcftools:1.7
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bcftools:1.7" --push src/.docker_modules/bcftools/1.7 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bcftools:1.7" --push src/.docker_modules/bcftools/1.7
#!/bin/sh #!/bin/sh
docker pull lbmc/bedops:2.4.39 docker pull lbmc/bedops:2.4.39
docker build src/.docker_modules/bedops/2.4.39 -t 'lbmc/bedops:2.4.39' # docker build src/.docker_modules/bedops/2.4.39 -t 'lbmc/bedops:2.4.39'
docker push lbmc/bedops:2.4.39 # docker push lbmc/bedops:2.4.39
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedops:2.4.39" --push src/.docker_modules/bedops/2.4.39 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedops:2.4.39" --push src/.docker_modules/bedops/2.4.39
#!/bin/sh #!/bin/sh
docker pull lbmc/bedtools:2.25.0 docker pull lbmc/bedtools:2.25.0
docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' # docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0'
docker push lbmc/bedtools:2.25.0 # docker push lbmc/bedtools:2.25.0
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.25.0" --push src/.docker_modules/bedtools/2.25.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.25.0" --push src/.docker_modules/bedtools/2.25.0
#!/bin/sh #!/bin/sh
docker pull lbmc/bedtools:2.30.0 docker pull lbmc/bedtools:2.30.0
docker build src/.docker_modules/bedtools/2.30.0 -t 'lbmc/bedtools:2.30.0' # docker build src/.docker_modules/bedtools/2.30.0 -t 'lbmc/bedtools:2.30.0'
docker push lbmc/bedtools:2.30.0 # docker push lbmc/bedtools:2.30.0
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.30.0" --push src/.docker_modules/bedtools/2.30.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bedtools:2.30.0" --push src/.docker_modules/bedtools/2.30.0
#!/bin/sh #!/bin/sh
docker pull lbmc/bioawk:1.0 docker pull lbmc/bioawk:1.0
docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' # docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0'
docker push lbmc/bioawk:1.0 # docker push lbmc/bioawk:1.0
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioawk:1.0" --push src/.docker_modules/bioawk/1.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioawk:1.0" --push src/.docker_modules/bioawk/1.0
#!/bin/sh #!/bin/sh
docker pull lbmc/bioconvert:0.4.0 docker pull lbmc/bioconvert:0.4.0
docker build src/.docker_modules/bioconvert/0.4.0 -t 'lbmc/bioconvert:0.4.0' # docker build src/.docker_modules/bioconvert/0.4.0 -t 'lbmc/bioconvert:0.4.0'
docker push lbmc/bioconvert:0.4.0 # docker push lbmc/bioconvert:0.4.0
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.0" --push src/.docker_modules/bioconvert/0.4.0 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.0" --push src/.docker_modules/bioconvert/0.4.0
#!/bin/sh #!/bin/sh
docker pull lbmc/bioconvert:0.4.3 docker pull lbmc/bioconvert:0.4.3
docker build src/.docker_modules/bioconvert/0.4.3 -t 'lbmc/bioconvert:0.4.3' # docker build src/.docker_modules/bioconvert/0.4.3 -t 'lbmc/bioconvert:0.4.3'
docker push lbmc/bioconvert:0.4.3 # docker push lbmc/bioconvert:0.4.3
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.3" --push src/.docker_modules/bioconvert/0.4.3 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bioconvert:0.4.3" --push src/.docker_modules/bioconvert/0.4.3
#!/bin/sh #!/bin/sh
docker pull lbmc/bowtie:1.2.2 docker pull lbmc/bowtie:1.2.2
docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' # docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2'
docker push lbmc/bowtie:1.2.2 # docker push lbmc/bowtie:1.2.2
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie:1.2.2" --push src/.docker_modules/bowtie/1.2.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie:1.2.2" --push src/.docker_modules/bowtie/1.2.2
#!/bin/sh #!/bin/sh
docker pull lbmc/bowtie2:2.3.4.1 docker pull lbmc/bowtie2:2.3.4.1
docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' # docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1'
docker push lbmc/bowtie2:2.3.4.1 # docker push lbmc/bowtie2:2.3.4.1
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie2:2.3.4.1" --push src/.docker_modules/bowtie2/2.3.4.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bowtie2:2.3.4.1" --push src/.docker_modules/bowtie2/2.3.4.1
#!/bin/sh #!/bin/sh
docker pull lbmc/bwa:0.7.17 docker pull lbmc/bwa:0.7.17
docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' # docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17'
docker push lbmc/bwa:0.7.17 # docker push lbmc/bwa:0.7.17
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bwa:0.7.17" --push src/.docker_modules/bwa/0.7.17 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/bwa:0.7.17" --push src/.docker_modules/bwa/0.7.17
#!/bin/sh #!/bin/sh
docker pull lbmc/canu:1.6 docker pull lbmc/canu:1.6
docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6' # docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6'
docker push lbmc/canu:1.6 # docker push lbmc/canu:1.6
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/canu:1.6" --push src/.docker_modules/canu/1.6 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/canu:1.6" --push src/.docker_modules/canu/1.6
#!/bin/sh #!/bin/sh
docker pull lbmc/crossmap:0.4.1 docker pull lbmc/crossmap:0.4.1
docker build src/.docker_modules/crossmap/0.4.1/ -t 'lbmc/crossmap:0.4.1' # docker build src/.docker_modules/crossmap/0.4.1/ -t 'lbmc/crossmap:0.4.1'
docker push lbmc/crossmap:0.4.1 # docker push lbmc/crossmap:0.4.1
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/crossmap:0.4.1" --push src/.docker_modules/crossmap/0.4.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/crossmap:0.4.1" --push src/.docker_modules/crossmap/0.4.1
#!/bin/sh #!/bin/sh
docker pull lbmc/cutadapt:1.14 docker pull lbmc/cutadapt:1.14
docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' # docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14'
docker push lbmc/cutadapt:1.14 # docker push lbmc/cutadapt:1.14
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.14" --push src/.docker_modules/cutadapt/1.14 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.14" --push src/.docker_modules/cutadapt/1.14
#!/bin/sh #!/bin/sh
docker pull lbmc/cutadapt:1.15 docker pull lbmc/cutadapt:1.15
docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' # docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15'
docker push lbmc/cutadapt:1.15 # docker push lbmc/cutadapt:1.15
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.15" --push src/.docker_modules/cutadapt/1.15 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:1.15" --push src/.docker_modules/cutadapt/1.15
#!/bin/sh #!/bin/sh
docker pull lbmc/cutadapt:2.1 docker pull lbmc/cutadapt:2.1
docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' # docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1'
docker push lbmc/cutadapt:2.1 # docker push lbmc/cutadapt:2.1
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:2.1" --push src/.docker_modules/cutadapt/2.1 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/cutadapt:2.1" --push src/.docker_modules/cutadapt/2.1
#!/bin/sh #!/bin/sh
docker pull lbmc/danpos3:2f7f223 docker pull lbmc/danpos3:2f7f223
docker build src/.docker_modules/danpos3/2f7f223 -t 'lbmc/danpos3:2f7f223' # docker build src/.docker_modules/danpos3/2f7f223 -t 'lbmc/danpos3:2f7f223'
docker push lbmc/danpos3:2f7f223 # docker push lbmc/danpos3:2f7f223
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/danpos3:2f7f223" --push src/.docker_modules/danpos3/2f7f223 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/danpos3:2f7f223" --push src/.docker_modules/danpos3/2f7f223
#!/bin/sh #!/bin/sh
docker pull lbmc/deeptools:3.0.2 docker pull lbmc/deeptools:3.0.2
docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' # docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2'
docker push lbmc/deeptools:3.0.2 # docker push lbmc/deeptools:3.0.2
docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.0.2" --push src/.docker_modules/deeptools/3.0.2 docker buildx build --platform linux/amd64,linux/arm64 -t "lbmc/deeptools:3.0.2" --push src/.docker_modules/deeptools/3.0.2
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