Merge branch 'master' of gitbio.ens-lyon.fr:pipelines/nextflow

doc/TP_computational_biologists.md

doc/TP_experimental_biologists.md

doc/mail.txt

src/.conda_envs/gatk_4.0.8.1

src/.conda_envs/ncdu

src/.conda_envs/python_mars_seq_modules

src/.conda_envs/r_mars_seq_modules_r

src/.conda_packages.sh

src/.docker_modules/gatk/3.8.0/Dockerfile

src/.docker_modules/gatk/3.8.0/docker_init.sh

src/.docker_modules/htseq/0.11.2/Dockerfile

src/.docker_modules/htseq/0.11.2/docker_init.sh

src/.docker_modules/umi_tools/1.0.0/Dockerfile

src/nf_modules/bedtools/fasta_from_bed.config

src/nf_modules/cutadapt/adaptor_removal_paired.config

src/nf_modules/cutadapt/adaptor_removal_single.config

src/nf_modules/cutadapt/trimming_paired.config

src/nf_modules/cutadapt/trimming_single.config

src/nf_modules/kallisto/indexing.config