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Verified Commit c5a1c0a9 authored by Laurent Modolo's avatar Laurent Modolo
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rmi_splitter.py: fix remove_barcode_pos to rm barcode from qual_str

parent 7b67fb05
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...@@ -458,10 +458,12 @@ def remove_barcode_pos(reads, start, stop, header, verbose=False): ...@@ -458,10 +458,12 @@ def remove_barcode_pos(reads, start, stop, header, verbose=False):
if start == 0: if start == 0:
reads.seq = reads.seq[stop:] reads.seq = reads.seq[stop:]
reads.qual = reads.qual[stop:] reads.qual = reads.qual[stop:]
reads.qual_str = reads.qual_str[stop:]
else: else:
stop = stop - 1 stop = stop - 1
reads.seq = reads.seq[0:start] + reads.seq[stop:] reads.seq = reads.seq[0:start] + reads.seq[stop:]
reads.qual = reads.qual[0:start] + reads.qual[stop:] reads.qual = reads.qual[0:start] + reads.qual[stop:]
reads.qual_str = reads.qual_str[0:start] + reads.qual_str[stop:]
return reads return reads
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