Commit 7b3b8f75 authored by cbedet1's avatar cbedet1
Browse files

command line to publish the results after quantif

parent 712447cc
......@@ -6,7 +6,7 @@ log.info "bed file : ${params.bed}"
include { fastp } from "./nf_modules/fastp/main.nf"
include { fasta_from_bed } from "./nf_modules/bedtools/main.nf"
include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main.nf'
include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main.nf' addParams(mapping_fastq_out: "quantification/")
params.fastq = "data/fastq/*_{1,2}.fastq"
......
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