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Unverified Commit b6551f07 authored by Laurent Modolo's avatar Laurent Modolo
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1_JU28_59vs17_SNP_calling.sh: blast of 5S on the assembly

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src/1_JU28_59vs17_SNP_calling.sh
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......@@ -27,3 +27,8 @@ src/intersect_SNP.R \
data/list_of_enzymes.csv
~/scripts/sms.sh "SNP analysis done"
mkdir -p results/blastall/
makeblastdb -in data/fasta/DBG2OLC_output2.fasta -parse_seqids -dbtype nucl
blastn -query data/RNA5S_belari.fasta -db data/fasta/DBG2OLC_output2.fasta -out results/blastall/RNA5S.out
less results/blastall/RNA5S.out
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