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tests.sh

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    tests.sh NaN GiB
    ./nextflow src/nf_modules/sambamba/sort_bams.nf \
      -c src/nf_modules/sambamba/sort_bams.config \
      -profile docker \
      --bam "data/tiny_dataset/map/tiny_v2.bam" \
      -resume
    
    ./nextflow src/nf_modules/sambamba/index_bams.nf \
      -c src/nf_modules/sambamba/index_bams.config \
      -profile docker \
      --bam "data/tiny_dataset/map/tiny_v2.sort.bam" \
      -resume
    
    ./nextflow src/nf_modules/sambamba/split_bams.nf \
      -c src/nf_modules/sambamba/split_bams.config \
      -profile docker \
      --bam "data/tiny_dataset/map/tiny_v2.bam" \
      -resume
    
    if [ -x "$(command -v singularity)" ]; then
    ./nextflow src/nf_modules/sambamba/sort_bams.nf \
      -c src/nf_modules/sambamba/sort_bams.config \
      -profile singularity \
      --bam "data/tiny_dataset/map/tiny_v2.bam" \
      -resume
    
    ./nextflow src/nf_modules/sambamba/index_bams.nf \
      -c src/nf_modules/sambamba/index_bams.config \
      -profile singularity \
      --bam "data/tiny_dataset/map/tiny_v2.sort.bam" \
      -resume
    
    ./nextflow src/nf_modules/sambamba/split_bams.nf \
      -c src/nf_modules/sambamba/split_bams.config \
      -profile singularity \
      --bam "data/tiny_dataset/map/tiny_v2.bam" \
      -resume
    fi