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tests.sh NaN GiB
./nextflow src/nf_modules/sambamba/sort_bams.nf \
-c src/nf_modules/sambamba/sort_bams.config \
-profile docker \
--bam "data/tiny_dataset/map/tiny_v2.bam" \
-resume
./nextflow src/nf_modules/sambamba/index_bams.nf \
-c src/nf_modules/sambamba/index_bams.config \
-profile docker \
--bam "data/tiny_dataset/map/tiny_v2.sort.bam" \
-resume
./nextflow src/nf_modules/sambamba/split_bams.nf \
-c src/nf_modules/sambamba/split_bams.config \
-profile docker \
--bam "data/tiny_dataset/map/tiny_v2.bam" \
-resume
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/sambamba/sort_bams.nf \
-c src/nf_modules/sambamba/sort_bams.config \
-profile singularity \
--bam "data/tiny_dataset/map/tiny_v2.bam" \
-resume
./nextflow src/nf_modules/sambamba/index_bams.nf \
-c src/nf_modules/sambamba/index_bams.config \
-profile singularity \
--bam "data/tiny_dataset/map/tiny_v2.sort.bam" \
-resume
./nextflow src/nf_modules/sambamba/split_bams.nf \
-c src/nf_modules/sambamba/split_bams.config \
-profile singularity \
--bam "data/tiny_dataset/map/tiny_v2.bam" \
-resume
fi