Quantitative nucleosome and Chip-Seq pipeline
This repository contains 3 differents pipelines:
- A chip_analysis.nf for classical Chip-Seq analysis: README_chip.md
- A mnase_mapping.nf and mnase_analysis.nf for nucleosome data analysis: README_chip.md
- A chip_quant_analysis.nf for quantitative Chip-Seq analysis: README_chip.md
Getting the last updates
To get the last commits from this repository into your fork use the following commands:
For the first time:
git remote add upstream git@gitbio.ens-lyon.fr:LBMC/nextflow.git
git pull upstream master
Then to make an update:
git pull upstream master
git merge upstream/master
Getting Started
These instructions will get you a copy of the project as a template when you want to build your own pipeline.
Building your pipeline
You can follow the building your pipeline guide for a gentle introduction to nextflow
and taking advantage of this template to build your pipelines.
Existing Nextflow pipeline
Before starting a new project, you can check if someone else didn’t already to the work !
Contributing
If you want to add more tools to this project, please read the CONTRIBUTING.md.
Authors
- Laurent Modolo - Initial work
See also the list of contributors who participated in this project.
License
This project is licensed under the CeCiLL License- see the LICENSE file for details