Skip to content
Snippets Groups Projects
Commit 32e0f0b5 authored by Sergio Sarnataro's avatar Sergio Sarnataro
Browse files

deleted the website that I read the first time speaking about clustering optimum

parent d646756d
No related branches found
No related tags found
No related merge requests found
...@@ -3,8 +3,6 @@ ...@@ -3,8 +3,6 @@
This function aims to find the optimum resolution parameter for clustering single-cell RNA-Seq data analyzed with _scanpy_, by calculating the BIC score or the Calinski-Harabasz score of each clustering. This function aims to find the optimum resolution parameter for clustering single-cell RNA-Seq data analyzed with _scanpy_, by calculating the BIC score or the Calinski-Harabasz score of each clustering.
It has been inspired by this [read](https://towardsdatascience.com/are-you-still-using-the-elbow-method-5d271b3063bd) and then adapted to the single-cell analysis in scanpy.
Here, the minimum of the BIC or Calinski-Harabasz score indicates the optimum resolution parameter. Here, the minimum of the BIC or Calinski-Harabasz score indicates the optimum resolution parameter.
### BIC score ### BIC score
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment