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a2f9dcc6

Unverified Commit a2f9dcc6 authored 6 years ago by Laurent Modolo

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Merge branch 'Delattre/JU28_59vs17_SNP-master' into dev to get BWA GATK...

Merge branch 'Delattre/JU28_59vs17_SNP-master' into dev to get BWA GATK sambamba samblaster and bcftools

parents aac64942 3ecf28b8

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src/nf_modules/sambamba/index_bams.nf 26 additions, 0 deletions

src/nf_modules/sambamba/index_bams.nf
src/nf_modules/sambamba/sort_bams.config 18 additions, 0 deletions

src/nf_modules/sambamba/sort_bams.config
src/nf_modules/sambamba/sort_bams.nf 26 additions, 0 deletions

src/nf_modules/sambamba/sort_bams.nf
src/nf_modules/sambamba/split_bams.config 18 additions, 0 deletions

src/nf_modules/sambamba/split_bams.config
src/nf_modules/sambamba/split_bams.nf 27 additions, 0 deletions

src/nf_modules/sambamba/split_bams.nf
src/nf_modules/sambamba/tests.sh 14 additions, 0 deletions

src/nf_modules/sambamba/tests.sh
src/nf_modules/samblaster/dedup_sams.config 18 additions, 0 deletions

src/nf_modules/samblaster/dedup_sams.config
src/nf_modules/samblaster/dedup_sams.nf 26 additions, 0 deletions

src/nf_modules/samblaster/dedup_sams.nf
src/nf_modules/samblaster/tests.sh 4 additions, 0 deletions

src/nf_modules/samblaster/tests.sh

with 177 additions and 0 deletions

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