nf modules config: remove cpus info

src/nf_modules/RSEM/quantification_single.config

@@ -15,7 +15,6 @@ profiles {
         module = "RSEM/1.3.0:SAMtools/1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/SAMtools/filter_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "SAMtools/1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/SAMtools/index_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "SAMtools/1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/SAMtools/sort_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "SAMtools/1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/SAMtools/split_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "SAMtools/1.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/SRAtoolkit/fastqdump.config

@@ -15,7 +15,6 @@ profiles {
         module = "SRAtoolkit/2.8.2"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/UrQt/trimming_paired.config

@@ -15,7 +15,6 @@ profiles {
         module = "UrQt/d62c1f8"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "5GB"
         time = "12h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/UrQt/trimming_single.config

@@ -15,7 +15,6 @@ profiles {
         module = "UrQt/d62c1f8"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "5GB"
         time = "12h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/cutadapt/adaptor_removal_paired.config

@@ -15,7 +15,6 @@ profiles {
         module = "cutadapt/1.14"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/cutadapt/adaptor_removal_single.config

@@ -15,7 +15,6 @@ profiles {
         module = "cutadapt/1.14"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/cutadapt/trimming_paired.config

@@ -15,7 +15,6 @@ profiles {
         module = "cutadapt/1.14"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/cutadapt/trimming_single.config

@@ -15,7 +15,6 @@ profiles {
         module = "cutadapt/1.14"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'

src/nf_modules/sambamba/index_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "sambamba/0.6.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/sambamba/sort_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "sambamba/0.6.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/sambamba/split_bams.config

@@ -15,7 +15,6 @@ profiles {
         module = "sambamba/0.6.7"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/nf_modules/samblaster/dedup_sams.config

@@ -15,7 +15,6 @@ profiles {
         module = "samblaster/0.1.24"
         executor = "sge"
         clusterOptions = "-m e -cwd -V"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'

src/training_dataset.config

@@ -45,7 +45,6 @@ profiles {
         module = "BEDtools/2.25.0"
         executor = "sge"
         clusterOptions = "-m be -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -55,7 +54,6 @@ profiles {
         module = "BEDtools/2.25.0"
         executor = "sge"
         clusterOptions = "-m be -cwd -V"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -64,7 +62,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "Bowtie2/2.3.4.1"
         executor = "sge"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -74,7 +71,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "Bowtie2/2.3.4.1:SAMtools/1.7"
         executor = "sge"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -84,7 +80,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -93,7 +88,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -102,7 +96,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -111,7 +104,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "Bowtie2/2.3.4.1:SAMtools/1.7"
         executor = "sge"
-        cpus = 16
         memory = "30GB"
         time = "24h"
         queue = 'E5-2670deb128A,E5-2670deb128B,E5-2670deb128C,E5-2670deb128D,E5-2670deb128E,E5-2670deb128F'
@@ -121,7 +113,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -130,7 +121,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'
@@ -139,7 +129,6 @@ profiles {
         beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
         module = "SAMtools/1.7"
         executor = "sge"
-        cpus = 1
         memory = "20GB"
         time = "12h"
         queue = 'monointeldeb128'