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Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.
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Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.
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Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.
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Analysis of a screen for positive selection in the genes of the SARS-CoV-2 interactome.
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Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier
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Biosphere environment for UE NGS VM
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Just a test project to see how mport on GitHub works
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This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory
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Create venn diagram from 2 bed files
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small project to check repeat content on Y backbone of belari assembly
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script allowing the visualization of the coverage in bigwig files
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Repository of the report of the Biocomputing comittee
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Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data
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Database of public ChIA-PET data to visualise proximal interactions.
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Pipeline dedicated to ChIPseq.
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