GitLab

Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.

Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.

Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.

Analysis of a screen for positive selection in the genes of the SARS-CoV-2 interactome.

Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier

Biosphere environment for UE NGS VM

This project allows to display the size distribution of genomic intervals inside every bed files located in a given directory

Create venn diagram from 2 bed files

small project to check repeat content on Y backbone of belari assembly

script allowing the visualization of the coverage in bigwig files

Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data

Database of public ChIA-PET data to visualise proximal interactions.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.

Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)

Analysis of the composition biais within the exons