Explore projects

Analysis of Chromosome Conformation Capture data (Hi-C)

A program and a set of tools for QC and analysis of coding transcripts obtained after parsing of .gff3 and genome .fa files.

Database of public ChIA-PET data to visualise proximal interactions.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Visium Analysis Pipeline to process 10x Visium data from pituitary tumors

This repository is a template containing scripts to help you build your own nextflow pipeline.

Scripts for paper Evaluation of genome and base editing tools in maize protoplasts (Fierlej et al, Front. Plant Sci. 2022)

Source code of the algorithm CARDAMOM developed for inferring GRN from timestamped scRNA-seq data