This repository is a template containing scripts to help you build your own nextflow pipeline.
RNA-seq analysis of cell layer-specific expression of gene PhDEF in Petunia petals
Scripts for paper Evaluation of genome and base editing tools in maize protoplasts (Fierlej et al, Front. Plant Sci. 2022)
Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.
Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria.
Project from Léo Hardy and Xavier Charpentier
Create a Nextflow pipeline for juicer module
Visium Analysis Pipeline to process 10x Visium data from pituitary tumors
Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)
Program analyzing QY2H data (.fcs files) and generating affinity ladder. A GUI has been developed for later release in the context of the publication to come.