Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.
Positive selection screen on SARS-CoV-2 interactome: Analysis of DGINN pipeline's output.
Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.
Analysis of a screen for positive selection in the genes of the SARS-CoV-2 interactome.
Biosphere environment for UE NGS VM
Scripts exploring Chimp and Gorilla data with different packages for population genetics (pegas, adegenet, popGenome, etc.)
Infer identity of myoblasts, at several development stages, through Seurat single-cell clustering analysis.
Analysis of the composition biais within the exons
Condensin positioning at telomeres by the Shelterin protein Taz1/TRF1 is crucial for telomere disjunction in mitosis.
Pipeline used to run deltaTE analysis
This is an R package dedicated to perform Differential expression analysis from HTSeq_count results file