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Formation on scRNA data analysis

RNA-seq analysis of cell layer-specific expression of gene PhDEF in Petunia petals

Infer identity of myoblasts, at several development stages, through Seurat single-cell clustering analysis.

Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.

Support of the 2022 scRNA-Seq analysis course

This repository is a template containing scripts to help you build your own nextflow pipeline.

Analysis scripts for the RAPToR paper

This repository contains all supplementary data referred to in my PhD manuscript.

This is an R package dedicated to perform Differential expression analysis from HTSeq_count results file

Analysis of the composition biais within the exons

SNP calling pipeline to find homozygote SNPs present in JU2817 strain but not in JU2859

Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.

This repository is a template containing scripts to help you build your own nextflow pipeline.

Copie du pipeline de Maxime Lepetit, pour y adapter mon workflow